The type ode_output handles output for ODE simulations. More...

Collaboration diagram for ode_output_mod::ode_output:

Private Member Functions
final	ode_output_clear
	destructor More...

type(ode_output) function	ode_output_create (t0, T, N)
	Constructor for the type ode_output More...

Private Attributes
logical	created = .FALSE.
	has the type construction been initialised ? More...

logical	assembled = .FALSE.
	has the type construction been finalised ? More...

integer	dim
	Dimension in space. More...

integer	n
	Size of the unknown \( Y \in R^N \). More...

real(rp)	t0
	Starting time. More...

real(rp)	t
	Final time. More...

integer	verb
	verbosity level More...

real(rp)	ytn_period
	Ytn_period = memory storing period for Y(., t_n) More...

real(rp)	vtn_period
	Vtn_period = memory storing period for V(., t_n) More...

real(rp)	vtn_rec_prd
	Vtn_rec_prd = file record periof for V(., t_n) More...

logical	vtn_plot
	Vtn_plot = Plot of V(., t_n) ? More...

integer, dimension(:), allocatable	xn_list
	List of the nodes x_n requiring a recording. More...

real(rp)	vxn_period
	Vxn_period = memory storing period for V(x_n,.) More...

character(len=75)	vxn_file
	Vxn_period = memory storing period for V(x_n,.) More...

logical	vxn_plot
	Vxn_plot = Plot of V(x_n,.) ? More...

integer	act_type
	act_type = computation method for activation times More...

real(rp)	act_vth
	act_Vth = threshold for activation times computation More...

logical	act_plot
	act_plot = Plot activation times ? More...

logical	act_rec
	act_rec = recording activation times to file act.dat ? More...

logical	stop_if_dep
	stop_if_dep = stop if fully depolarised domain ? More...

integer	pos
	pos = plot file format More...

character(len=150)	outdir
	outdir = directory for file recordings More...

character(len=50)	vtn_file
	Vtn_FILE = prefix for potential recordings. More...

character(len=50)	act_file
	ACT_FILE = prefix for activation time recordings. More...

real(rp)	dt
	dt = time step More...

type(fespace), pointer	x_h =>NULL()
	X_h = finite element space. More...

real(rp), dimension(:,:,:), allocatable	ytn
	Array to store the solution Y(.,t_n) More...

real(rp), dimension(:,:), allocatable	vtn
	Array to store the potential V(.,t_n) More...

real(rp), dimension(:,:), allocatable	vxn
	Array to store the potential V(x_n,.) More...

real(rp), dimension(:,:), allocatable	v
	Array ro store the previous time step of the potential V for the computation of activation times. More...

real(rp), dimension(:), allocatable	act
	array to store the actication times More...

integer	nbdof
	number of DOF in space = size(Y,2) = size(V,2) More...

integer	nv
	number of instances of the potential V to be stored for the computation of activation times More...

integer	ytn_cpt
	counter for the recording of Y(.,t_n) More...

integer	vtn_cpt
	counter for the recording of V(.,t_n) More...

integer	vtn_rec_cpt
	counter for the saving of V(.,t_n) More...

integer	vxn_cpt
	counter for the recording of V(x_n,.) More...

Detailed Description

The type ode_output handles output for ODE simulations.

See the description in ode_output_mod detailed description.

Definition at line 87 of file ode_output_mod.F90.

Member Function/Subroutine Documentation

◆ ode_output_clear()

final ode_output_mod::ode_output::ode_output_clear ( )

finalprivate

destructor

Definition at line 190 of file ode_output_mod.F90.

Here is the call graph for this function:

◆ ode_output_create()

type(ode_output) function ode_output_mod::ode_output::ode_output_create	(	real(rp), intent(in)	t0,
		real(rp), intent(in)	T,
		integer, intent(in)	N
	)

private

Constructor for the type ode_output

OUTPUT:
- out = ode_output

INPUT:
- dim = dimension in space
- t0, T = starting and final time
- N = number of unknowns per node

Definition at line 256 of file ode_output_mod.F90.

Member Data Documentation

◆ act

real(rp), dimension(:), allocatable ode_output_mod::ode_output::act

private

array to store the actication times

Definition at line 171 of file ode_output_mod.F90.

◆ act_file

character(len=50) ode_output_mod::ode_output::act_file

private

ACT_FILE = prefix for activation time recordings.

Definition at line 145 of file ode_output_mod.F90.

◆ act_plot

logical ode_output_mod::ode_output::act_plot

private

act_plot = Plot activation times ?

Definition at line 133 of file ode_output_mod.F90.

◆ act_rec

logical ode_output_mod::ode_output::act_rec

private

act_rec = recording activation times to file act.dat ?

Definition at line 135 of file ode_output_mod.F90.

◆ act_type

integer ode_output_mod::ode_output::act_type

private

act_type = computation method for activation times

Definition at line 129 of file ode_output_mod.F90.

◆ act_vth

real(rp) ode_output_mod::ode_output::act_vth

private

act_Vth = threshold for activation times computation

Definition at line 131 of file ode_output_mod.F90.

◆ assembled

logical ode_output_mod::ode_output::assembled = .FALSE.

private

has the type construction been finalised ?

Definition at line 93 of file ode_output_mod.F90.

◆ created

logical ode_output_mod::ode_output::created = .FALSE.

private

has the type construction been initialised ?

Definition at line 90 of file ode_output_mod.F90.

◆ dim

integer ode_output_mod::ode_output::dim

private

Dimension in space.

Definition at line 99 of file ode_output_mod.F90.

◆ dt

real(rp) ode_output_mod::ode_output::dt

private

dt = time step

Definition at line 152 of file ode_output_mod.F90.

◆ n

integer ode_output_mod::ode_output::n

private

Size of the unknown \( Y \in R^N \).

Definition at line 101 of file ode_output_mod.F90.

◆ nbdof

integer ode_output_mod::ode_output::nbdof

private

number of DOF in space = size(Y,2) = size(V,2)

Definition at line 173 of file ode_output_mod.F90.

◆ nv

integer ode_output_mod::ode_output::nv

private

number of instances of the potential V to be stored for the computation of activation times

Definition at line 177 of file ode_output_mod.F90.

◆ outdir

character(len=150) ode_output_mod::ode_output::outdir

private

outdir = directory for file recordings

Definition at line 141 of file ode_output_mod.F90.

◆ pos

integer ode_output_mod::ode_output::pos

private

pos = plot file format

Definition at line 139 of file ode_output_mod.F90.

◆ stop_if_dep

logical ode_output_mod::ode_output::stop_if_dep

private

stop_if_dep = stop if fully depolarised domain ?

Definition at line 137 of file ode_output_mod.F90.

◆ t

real(rp) ode_output_mod::ode_output::t

private

Final time.

Definition at line 105 of file ode_output_mod.F90.

◆ t0

real(rp) ode_output_mod::ode_output::t0

private

Starting time.

Definition at line 103 of file ode_output_mod.F90.

◆ v

real(rp), dimension(:,:), allocatable ode_output_mod::ode_output::v

private

Array ro store the previous time step of the potential V for the computation of activation times.

Definition at line 169 of file ode_output_mod.F90.

◆ verb

integer ode_output_mod::ode_output::verb

private

verbosity level

Definition at line 111 of file ode_output_mod.F90.

◆ vtn

real(rp), dimension(:,:), allocatable ode_output_mod::ode_output::vtn

private

Array to store the potential V(.,t_n)

Definition at line 163 of file ode_output_mod.F90.

◆ vtn_cpt

integer ode_output_mod::ode_output::vtn_cpt

private

counter for the recording of V(.,t_n)

Definition at line 181 of file ode_output_mod.F90.

◆ vtn_file

character(len=50) ode_output_mod::ode_output::vtn_file

private

Vtn_FILE = prefix for potential recordings.

Definition at line 143 of file ode_output_mod.F90.

◆ vtn_period

real(rp) ode_output_mod::ode_output::vtn_period

private

Vtn_period = memory storing period for V(., t_n)

Definition at line 115 of file ode_output_mod.F90.

◆ vtn_plot

logical ode_output_mod::ode_output::vtn_plot

private

Vtn_plot = Plot of V(., t_n) ?

Definition at line 119 of file ode_output_mod.F90.

◆ vtn_rec_cpt

integer ode_output_mod::ode_output::vtn_rec_cpt

private

counter for the saving of V(.,t_n)

Definition at line 183 of file ode_output_mod.F90.

◆ vtn_rec_prd

real(rp) ode_output_mod::ode_output::vtn_rec_prd

private

Vtn_rec_prd = file record periof for V(., t_n)

Definition at line 117 of file ode_output_mod.F90.

◆ vxn

real(rp), dimension(:,:), allocatable ode_output_mod::ode_output::vxn

private

Array to store the potential V(x_n,.)

Definition at line 165 of file ode_output_mod.F90.

◆ vxn_cpt

integer ode_output_mod::ode_output::vxn_cpt

private

counter for the recording of V(x_n,.)

Definition at line 185 of file ode_output_mod.F90.

◆ vxn_file

character(len=75) ode_output_mod::ode_output::vxn_file

private

Vxn_period = memory storing period for V(x_n,.)

Definition at line 125 of file ode_output_mod.F90.

◆ vxn_period

real(rp) ode_output_mod::ode_output::vxn_period

private

Vxn_period = memory storing period for V(x_n,.)

Definition at line 123 of file ode_output_mod.F90.

◆ vxn_plot

logical ode_output_mod::ode_output::vxn_plot

private

Vxn_plot = Plot of V(x_n,.) ?

Definition at line 127 of file ode_output_mod.F90.

◆ x_h

type(fespace), pointer ode_output_mod::ode_output::x_h =>NULL()

private

X_h = finite element space.

Definition at line 154 of file ode_output_mod.F90.

◆ xn_list

integer, dimension(:), allocatable ode_output_mod::ode_output::xn_list

private

List of the nodes x_n requiring a recording.

Definition at line 121 of file ode_output_mod.F90.

◆ ytn

real(rp), dimension(:,:,:), allocatable ode_output_mod::ode_output::ytn

private

Array to store the solution Y(.,t_n)

Definition at line 161 of file ode_output_mod.F90.

◆ ytn_cpt

integer ode_output_mod::ode_output::ytn_cpt

private

counter for the recording of Y(.,t_n)

Definition at line 179 of file ode_output_mod.F90.

◆ ytn_period

real(rp) ode_output_mod::ode_output::ytn_period

private

Ytn_period = memory storing period for Y(., t_n)

Definition at line 113 of file ode_output_mod.F90.

The documentation for this interface was generated from the following file:

/home/cpierre1/choral/SRC/ode_output_mod.F90

Private Member Functions

Private Attributes

Detailed Description

Member Function/Subroutine Documentation

◆ ode_output_clear()

◆ ode_output_create()

Member Data Documentation

◆ act

◆ act_file

◆ act_plot

◆ act_rec

◆ act_type

◆ act_vth

◆ assembled

◆ created

◆ dim

◆ dt

◆ n

◆ nbdof

◆ nv

◆ outdir

◆ pos

◆ stop_if_dep

◆ t

◆ t0

◆ v

◆ verb

◆ vtn

◆ vtn_cpt

◆ vtn_file

◆ vtn_period

◆ vtn_plot

◆ vtn_rec_cpt

◆ vtn_rec_prd

◆ vxn

◆ vxn_cpt

◆ vxn_file

◆ vxn_period

◆ vxn_plot

◆ x_h

◆ xn_list

◆ ytn

◆ ytn_cpt

◆ ytn_period