cardiomodel_mod Module Reference

DERIVED TYPE cardioModel More...

Data Types
interface	cardiomodel
	Derived type for tissue properties in cardiac electrophysiology. More...
interface	print
	print a short description More...

Functions/Subroutines
type(cardiomodel) function	cardiomodel_create (fibre, Am, conduc_type)
	constructor for cardioModel type More...
subroutine	set_conductivities (gil, git, gel, get, type)
	set conductivities More...
subroutine, public	scale_conductivities (cm, sc)
	rescale the conductivities More...
subroutine	cardiomodel_print (cm)
	print cardio model More...
subroutine, public	monodomain_assemble (M, S, cm, X_h, qd_M, qd_S)
	Assemble the monodomain diffusion matrices. More...
real(rp) function	usigmav (u, v, fd, gl, gt)
	scalar product u^T Sigma v More...

Detailed Description

DERIVED TYPE cardioModel

Tissue model in cardiac electrophysiology

Author

Charles Pierre

Function/Subroutine Documentation

cardiomodel_create()

type(cardiomodel) function cardiomodel_mod::cardiomodel_create ( procedure(r3tor3)  fibre, real(rp), intent(in)  Am, integer, intent(in)  conduc_type  )

private

constructor for cardioModel type

• OUTPUT:
  • cm = cardiac tissue model

• INPUT:
  • fbre = fibre orientation (procedural)
  • Am = cell membrane surface to volume ratio
  • conduc_type = conductivity denomination

Definition at line 99 of file cardioModel_mod.f90.

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cardiomodel_print()

subroutine cardiomodel_mod::cardiomodel_print ( type(cardiomodel), intent(in)  cm )

private

print cardio model

Definition at line 173 of file cardioModel_mod.f90.

monodomain_assemble()

subroutine, public cardiomodel_mod::monodomain_assemble	(	type(csr), intent(out)	M,
		type(csr), intent(out)	S,
		class(cardiomodel), intent(in)	cm,
		type(fespace), intent(in)	X_h,
		integer, intent(in)	qd_M,
		integer, intent(in)	qd_S
	)

Assemble the monodomain diffusion matrices.

OUTPUT :

• M = mass matrix for the monodomain model
• S = stiffness matrix for the monodomain model

INPUT :

• cm = cardio model
• X = finite element mesh node coordinates
• fe = finite element method type
• qd_M, qd_S = quadrature methods to assemble M and S

Definition at line 198 of file cardioModel_mod.f90.

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scale_conductivities()

subroutine, public cardiomodel_mod::scale_conductivities	(	type(cardiomodel), intent(inout)	cm,
		real(rp), intent(in)	sc
	)

rescale the conductivities

Definition at line 159 of file cardioModel_mod.f90.

set_conductivities()

subroutine cardiomodel_mod::set_conductivities ( real(rp), intent(out)  gil, real(rp), intent(out)  git, real(rp), intent(out)  gel, real(rp), intent(out)  get, integer, intent(in)  type  )

private

set conductivities

Definition at line 121 of file cardioModel_mod.f90.

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usigmav()

real(rp) function cardiomodel_mod::usigmav ( real(rp), dimension(3), intent(in)  u, real(rp), dimension(3), intent(in)  v, real(rp), dimension(3), intent(in)  fd, real(rp), intent(in)  gl, real(rp), intent(in)  gt  )

private

scalar product u^T Sigma v

with sigma = Diag( gl, gt, gt) in an orthonormal bass (e1, e2, e3) where e1 is colinear to fd

fd = fibre direction gl, gt = transverse and longitudinal conductivities

Definition at line 256 of file cardioModel_mod.f90.

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